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Dr. Anika Groß

About

  • 03/2016: Research stay at The Australian National University (ANU), Canberra, Australia
  • Since 04/2014: PostDoc at the Database Group, Universität Leipzig

  • Research assistant/PhD student at the Database Group and Interdisciplinary Centre for
    Bioinformatics (IZBI), Universität Leipzig (01/2008-03/2014)
  • Research assistant at Institute for Medical Immunology, MLU Halle-Wittenberg (11-12/2007)

  • Graduation: Dr. rer. nat., Universität Leipzig (03/2014)
  • Diploma in Bioinformatics, MLU Halle-Wittenberg (07/2007)

Contact

  • +49 341 97 32-240
  • gross [at] informatik.uni-leipzig.de
  • Augustusplatz 10, Paulinum, Room P419

Projects

Dissertation

Talks

PC Member / Reviewer

External Reviewer

Teaching

Lectures

Exercises & Practical Courses

Seminars

Supervision of Theses

  • BA Sebastian Günther: Migration des Dokumentenservers
  • MA Ying-Chi Lin: Visualisation and spatial analysis of selected datasets in LIFE
  • MA Kevin Jakob: Aufbau einer Infrastruktur zur Analyse von Massenspektrometrie-Daten am UFZ (Building an infrastructure for mass spectrometry data analysis at UFZ)
  • MA Julia Trabandt: Medi-Matcher: Matching von Medikamentennamen in Form von Freitexteingaben im Kontext von LIFE (Matching manual entries on drugs and agents in LIFE)
  • BA Oliver Swoboda: Realisierung des COnto-Diff Algorithmus innerhalb eines Protégé-Plugins (Building a COnto-Diff-Plugin for Protégé)
  • MA Sebastian Bulka: OLAP-basierte Fallstatistikanalysen von epidemiologischen Daten am LIFE-Forschungsinstitut (Evaluating OLAP systems to Analyze Epidemiologic Data in the LIFE Project)
  • MA Victor Christen: Verfahren für die Reparatur von Ontologie-Mappings in den Lebenswissenschaften (Reasoning of Ontology Mappings in the Life Sciences)
  • MA Anastasiya Chyhir: Evaluierung von Blocking-Verfahren zum effizienten Matching großer Ontologien in den Lebenswissenschaften (Evaluating blocking methods for efficient matching of large-scale ontologies in the life sciences)
  • MA Toni Fröschke: Aufbau eines Online-Dienstes zur webbasierten Versionierung von Ontologien (Development of an infrastructure for web-based ontology versioning)
  • MA Michael Gassner: Adaptierung von Ontologie-Mappings in den Lebenswissenschaften (Ontology mapping adaptation in the Life sciences)
  • BA Richard Uhlich: Erstellung von praktischen Lehrbeispielen im Rahmen eines Datenbanken-Seminars für Nicht-Informatiker (Building teaching examples for non-computer scientists in database seminars)
  • BA Victor Christen: Visualisierung der Evolution von Ontologien in den Lebenswissenschaften (Visualization of ontology evolution)
  • BA Anastasiya Chyhir: Analyse der Evolution von Mappings anhand ausgewählter Matchprobleme in den Lebenswissenschaften (Analysis of mapping evolution for selected match problems in the life sciences)
  • BA Michael Gassner: Realisierung eines Extraktionswerkzeugs zur Untersuchung von Trends in Themengebieten der Lebenswissenschaften (Analysis of research trends in PubMed using MeSH categories)
  • DA Henning Kropp: Berechnung von Diff-Evolution-Mappings zwischen geänderten Produktkatalogen (Computation of diff-evolution-mappings for product catalogs)
  • DA Yiming Huang: Stabilitätsanalyse von Ontologie-Mappings in GOMMA (Stability analysis of ontologies and mappings in GOMMA)

Publications



Google Scholar
publication iconChristen, Victor; Groß, Anika; Rahm, Erhard
A Reuse-based Annotation Approach for Medical Documents
Accepted for: 15th International Semantic Web Conference (ISWC), Kobe, October 2016
2016-10


Google Scholar
publication iconChristen, Victor; Groß, Anika; Rahm, Erhard
Approaches for Annotating Medical Documents
Accepted for: Lernen. Wissen. Daten. Analysen. (LWDA), Potsdam, September 2016
2016-09

further information
Google Scholar
publication iconGroß, A.; Pruski, C.; Rahm, E.
Evolution of Biomedical Ontologies and Mappings: Overview of Recent Approaches
Computational and Structural Biotechnology Journal
2016-09


Google Scholar
publication iconNentwig, Markus; Groß, Anika; Rahm, Erhard
A Clustering Approach for Holistic Link Discovery (Project overview)
Accepted for: Lernen. Wissen. Daten. Analysen. (LWDA), Potsdam, September 2016
2016-09


Google Scholar
publication iconLin, Ying-Chi; Groß, Anika; Kirsten, Toralf
Integration and visualization of spatial data in LIFE
it - Information Technology, to appear
2016-08
PDF
further information
Google Scholar
Christen, Victor; Groß, Anika; Varghese, Julian; Dugas, Martin; Rahm, Erhard
Annotating Medical Forms using UMLS
Proc. 11th Intl. Conference on Data Integration in the Life Sciences (DILS), Los Angeles, July 2015
2015-07
PDF
further information
Google Scholar
Christen, Victor; Hartung, Michael; Groß, Anika
Region Evolution eXplorer - A tool for discovering evolution trends in ontology regions
Journal of Biomedical Semantics 2015, 6:26
2015-06
PDF
further information
Google Scholar
Lee, L. H.; Groß, A.; Hartung, M.; Liou, D. M.; Rahm, E.
A Multi-Part Matching Strategy for Mapping LOINC with Laboratory Terminologies
Journal of the American Medical Informatics Association (JAMIA)
2014-09
PDF

Google Scholar
Christen, Victor; Groß, Anika; Hartung, Michael
REX - a tool for discovering evolution trends in ontology regions
Proc. 10th Intl. Conference on Data Integration in the Life Sciences (DILS), Lisbon, July 2014
2014-07
PDF
further information
Google Scholar
Groß, A.
Evolution von ontologiebasierten Mappings in den Lebenswissenschaften
Dissertation, Universität Leipzig
2014-03
PDF

Google Scholar
Groß, A.; Dos Reis, J.C.; Hartung, M.; Pruski, C.; Rahm, E.
Semi-Automatic Adaptation of Mappings between Life Science Ontologies
Proc. 9th Intl. Conference on Data Integration in the Life Sciences (DILS), Montreal, July 2013
2013-07
PDF

Google Scholar
Hartung, M.; Kolb, L.; Groß, A.; Rahm, E.
Optimizing Similarity Computations for Ontology Matching - Experiences from GOMMA
Proc. 9th Intl. Conference on Data Integration in the Life Sciences (DILS), 2013
2013-07
PDF

Google Scholar
Hartung, M.; Groß, A.; Rahm, E.
Composition Methods for Link Discovery
Proc. of 15. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW), 2013
2013-03
PDF
further information
Google Scholar
Hartung, M.; Groß, A.; Rahm, E.
COnto-Diff : Generation of Complex Evolution Mappings for Life Science Ontologies
Journal of Biomedical Informatics 46 (1): 15-32
2013-02-01
PDF

Google Scholar
Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E.
GOMMA Results for OAEI 2012
Seventh International Workshop on Ontology Matching @ ISWC 2012
2012-11
PDF
further information
Google Scholar
Groß, A.; Hartung, M.; Thor, A.; Rahm, E.
How do computed ontology mappings evolve? - A case study for life science ontologies
Joint Workshop on Knowledge Evolution and Ontology Dynamics @ ISWC 2012
2012-11

further information
Google Scholar
Groß, A.; Hartung, M.; Prüfer, K.; Kelso, J.; Rahm, E.
Impact of Ontology Evolution on Functional Analyses
Bioinformatics 28 (20): 2671-2677
2012-10-10
PDF

Google Scholar
Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E.
Effective Composition of Mappings for Matching Biomedical Ontologies
The Semantic Web: ESWC 2012 Satellite Events. Revised Selected Papers.
2012-09
PDF

Google Scholar
publication iconGroß, A.; Hartung, M.; Thor, A.; Rahm, E.
How do Ontology Mappings Change in the Life Sciences?
Selected Poster @ Intl. Conference on Data Integration in the Life Sciences (DILS)
2012-06
PDF

Google Scholar
publication iconHartung, M.; Groß, A.; Rahm, E.
Determining and Analyzing Semantic Ontology Changes with CODEX
Demo @ Intl. Conference on Data Integration in the Life Sciences (DILS)
2012-06
PDF

Google Scholar
Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E.
Effective Mapping Composition for Biomedical Ontologies
Semantic Interoperability in Medical Informatics @ ESWC 2012
2012-05
PDF
further information
Google Scholar
Groß, A.; Hartung, M.; Thor, A.; Rahm, E.
How do Ontology Mappings Change in the Life Sciences?
CoRR abs/1204.2731
2012-04
PDF
further information
Google Scholar
Hartung, M.; Groß, A.; Rahm, E.
CODEX: Exploration of semantic changes between ontology versions
Bioinformatics 28 (6): 895-896
2012-03
PDF
further information
Google Scholar
Kirsten, T.; Groß, A.; Hartung, M.; Rahm, E.
GOMMA: A Component-based Infrastructure for managing and analyzing Life Science Ontologies and their Evolution
Journal of Biomedical Semantics 2011, 2:6
2011-11
PDF
further information
Google Scholar
Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E.
Mapping Composition for Matching Large Life Science Ontologies
2nd International Conference on Biomedical Ontology (ICBO 2011)
2011-07
PDF
further information
Google Scholar
Hartung, M.; Groß, A.; Rahm, E.
Rule-based Generation of Diff Evolution Mappings between Ontology Versions
CoRR abs/1010.0122
2010-10
PDF

Google Scholar
Kirsten, T.; Kolb, L.; Hartung, M.; Groß, A.; Köpcke, H.; Rahm, E.
Data Partitioning for Parallel Entity Matching
Proc. 8th Intl. Workshop on Quality in Databases (QDB), 2010
2010-09
PDF

Google Scholar
Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E.
On Matching Large Life Science Ontologies in Parallel
7th International Conference on Data Integration in the Life Sciences (DILS 2010)
2010-08
PDF

Google Scholar
Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E.
Discovering Evolving Regions in Life Science Ontologies
7th International Conference on Data Integration in the Life Sciences (DILS 2010)
2010-08
PDF
further information
Google Scholar
Kirsten, T.; Hartung, M.; Groß, A.; Rahm, E.
Efficient Management of Biomedical Ontology Versions
LNCS 5872, pp.574-583, 4th Intl. Workshop on Ontology Content (Part of the OTM Conferences & Workshops)
2009-11
PDF
further information
Google Scholar
Hartung, M.; Kirsten, T.; Groß, A.; Rahm, E.
OnEX: Exploring changes in life science ontologies
BMC Bioinformatics 2009, 10:250
2009-08
PDF
further information
Google Scholar
Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E.
Estimating the Quality of Ontology-based Annotations by Considering Evolutionary Changes
Proc. 6th Data Integration in the Life Sciences (DILS) Conf., Springer LNCS 5647, 2009
2009-07
PDF

Google Scholar
Hartung, M.; Kirsten, T.; Groß, A.; Rahm, E.
Exploring changes in life science ontologies with OnEX
Poster at 7th Leipzig Research Festival for Life Sciences 2008 and 6th Intl. Workshop on Data Integration in the Life Sciences (DILS) 2009
2009-07
PDF

Google Scholar
Thor, A.; Hartung, M.; Groß, A.; Kirsten, T.; Rahm, E.
An Evolution-based Approach for Assessing Ontology Mappings - A Case Study in the Life Sciences
Proc. of 13. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW), 2009
2009-03
PDF

Google Scholar
Groß, A.; Hartung, M.; Kirsten, T.; Rahm, E.
Evolution-based analysis of functional protein annotation
Poster at 7th Leipzig Research Festival for Life Sciences 2008
2008-12